Upload Your Data

• Upload on the Web
• Upload with Command Line

Analyze Your Sample

• Overview
• Project Page
• Pipeline Details
• Single Sample Report Table
• Taxonomic Tree View
• Filtering

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Analyze Multiple Samples

• Overview
• Creating a Heatmap
• Heatmap Analysis
• Metadata in the Heatmap
• Viewing Sample and Taxon Details in the Heatmap
• Saving a Heatmap

Bulk Downloads

• Overview
• Initiate a Bulk Download
• View your Previous & Current Downloads
• Download Via the Command Line

Pipeline Releases

• Current: Version 4.0

FAQ

• How do I request an account?
• How do I submit a feature request?
• How do I create and use background models in IDseq?
• How do I interpret the quality of my ERCC results?
• How is the Phylogenetic Tree Computed?
• Where can I find the IDseq GitHub Project?

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