Overview

This is documentation to help you perform Quality Control checks in IDseq. We’ll walk through the user interface, pipeline results, run quality interpretation, and how to create a background model in the upcoming sections.

The main views you will use to interpret your data:

• Project Page will help you find your samples and understand the related metrics. 
• Sample QC will help you interpret the QC metrics and ensure your sequencing run was successful.
• Background Model will help you identify contamination.