Yes! The CZ ID mNGS and SARS-CoV-2 consensus genome pipelines support short- and long-read sequencing data from Illumina and Nanopore platforms, respectively. Click here to learn how to upload data to the mNGS Nanopore pipeline. See Upload SARS-CoV-2 Data for details on how to process SARS-CoV-2 nanopore data.
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