How should I cite the AMR module?

The CZ ID AMR pipeline implements the Resistance Gene Identifier (RGI) tool. Please use the following references when citing the AMR pipeline:

• CZ ID: KL Kalantar, et al.: IDseq—an open source cloud-based pipeline and analysis service for metagenomic pathogen detection and monitoring. GigaScience 9.10 (2020): giaa111
• RGI and CARD: Alcock et al. 2020. CARD 2020: antibiotic resistome surveillance with the Comprehensive Antibiotic Resistance Database. Nucleic Acids Research, 48, D517-D525